Variability of the Iceland‐Scotland overflow water transport through the Charlie‐Gibbs fracture zone : results from an eddying simulation and observations

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 123 (2018): 5808-5823, doi:10.1029/2018JC013895.Observations show that the westward transport of the Iceland‐Scotland overflow water (ISOW) through the Charlie‐Gibbs Fracture Zone (CGFZ) is highly variable. This study examines (a) where this variability comes from and (b) how it is related to the variability of ISOW transport at upstream locations in the Iceland Basin and other ISOW flow pathways. The analyses are based on a 35‐year 1/12° eddying Atlantic simulation that represents well the main features of the observed ISOW in the area of interest, in particular, the transport variability through the CGFZ. The results show that (a) the variability of the ISOW transport is closely correlated with that of the barotropic transports in the CGFZ associated with the meridional displacement of the North Atlantic Current front and is possibly induced by fluctuations of large‐scale zonal wind stress in the Western European Basin east of the CGFZ; (b) the variability of the ISOW transport is increased by a factor of 3 from the northern part of the Iceland Basin to the CGFZ region and transport time series at these two locations are not correlated, further suggesting that the variability at the CGFZ does not come from the upstream source; and (c) the variability of the ISOW transport at the CGFZ is strongly anticorrelated to that of the southward ISOW transport along the eastern flank of the Mid‐Atlantic Ridge, suggesting an out‐of‐phase covarying transport between these two ISOW pathways.Woods Hole Oceanographic Institution; National Oceanic and Atmospheric Administration Grant Number: NA15OAR4310088; U.S. National Science Foundation Grant Numbers: 1537136, OCE‐09266562019-02-2

Imaging calcium microdomains within entire astrocyte territories and endfeet with GCaMPs expressed using adeno-associated viruses.

Intracellular Ca(2+) transients are considered a primary signal by which astrocytes interact with neurons and blood vessels. With existing commonly used methods, Ca(2+) has been studied only within astrocyte somata and thick branches, leaving the distal fine branchlets and endfeet that are most proximate to neuronal synapses and blood vessels largely unexplored. Here, using cytosolic and membrane-tethered forms of genetically encoded Ca(2+) indicators (GECIs; cyto-GCaMP3 and Lck-GCaMP3), we report well-characterized approaches that overcome these limitations. We used in vivo microinjections of adeno-associated viruses to express GECIs in astrocytes and studied Ca(2+) signals in acute hippocampal slices in vitro from adult mice (aged ∼P80) two weeks after infection. Our data reveal a sparkling panorama of unexpectedly numerous, frequent, equivalently scaled, and highly localized Ca(2+) microdomains within entire astrocyte territories in situ within acute hippocampal slices, consistent with the distribution of perisynaptic branchlets described using electron microscopy. Signals from endfeet were revealed with particular clarity. The tools and experimental approaches we describe in detail allow for the systematic study of Ca(2+) signals within entire astrocytes, including within fine perisynaptic branchlets and vessel-associated endfeet, permitting rigorous evaluation of how astrocytes contribute to brain function

LMIs - A fundamental tool in analysis and controller design for discrete linear repetitive processes

Discrete linear repetitive processes are a distinct class of two-dimensional (2-D) linear systems with applications in areas ranging from long-wall coal cutting through to iterative learning control schemes. The feature which makes them distinct from other classes of 2-D linear systems is that information propagation in one of the two distinct directions only occurs over a finite durations. This, in turn, means that a distinct systems theory must be developed for them. In this paper, an LMI approach is used to produce highly significant new results on the stability analysis of these processes and the design of control schemes for them. These results are, in the main, for processes with singular dynamics and for those with so-called dynamic boundary conditions. Unlike other classes of 2-D linear systems, these feedback control laws have a firm physical basis, and the LMI setting is also shown to provide a (potentially) very powerful setting in which to characterize the robustness properties of these processes.published_or_final_versio

Structural insights into regulation of nuclear receptors by ligands

Nuclear receptors are DNA-binding transcription factors, the transcriptional function of many of which depends on the binding of ligands, a feature that distinguishes nuclear receptors from other transcription factors. This review will summarize recent advances in our knowledge of the interaction between selected nuclear receptors and their cognate ligands

Stereoselectivity in Atmospheric Autoxidation

We show that the diastereomers of hydroxy peroxy radicals formed from OH and O_2 addition to C2 and C3, respectively, of crotonaldehyde (CH_3CHCHCHO) undergo gas-phase unimolecular aldehydic hydrogen shift (H-shift) chemistry with rate coefficients that differ by an order of magnitude. The stereospecificity observed here for crotonaldehyde is general and will lead to a significant diastereomeric-specific chemistry in the atmosphere. This enhancement of specific stereoisomers by stereoselective gas-phase reactions could have widespread implications given the ubiquity of chirality in nature. The H-shift rate coefficients calculated using multiconformer transition state theory (MC-TST) agree with those determined experimentally using stereoisomer-specific gas-chromatography chemical ionization mass spectroscopy (GC–CIMS) measurements

PDF model based on Langevin equation for polydispersed two-phase flows applied to a bluff-body gas-solid flow,

The aim of the paper is to discuss the main characteristics of a complete theoretical and numerical model for turbulent polydispersed two-phase flows, pointing out some specific issues. The theoretical details of the model have already been presented [Minier and Peirano, Physics Reports, Vol. 352/1-3, 2001 ]. Consequently, the present work is mainly focused on complementary aspects, that are often overlooked and that require particular attention. In particular, the following points are analysed : the necessity to add an extra term in the equation for the velocity of the fluid seen in the case of twoway coupling, the theoretical and numerical evaluations of particle averages and the fulfilment of the particle mass-continuity constraint. The theoretical model is developed within the PDF formalism. The important-physical choice of the state vector variables is first discussed and the model is then expressed as a stochastic differential equation (SDE) written in continuous time (Langevin equations) for the velocity of the fluid seen. The interests and limitations of Langevin equations, compared to the single-phase case, are reviewed. From the numerical point of view, the model corresponds to an hybrid Eulerian/Lagrangian approach where the fluid and particle phases are simulated by different methods. Important aspects of the Monte Carlo particle/mesh numerical method are emphasised. Finally, the complete model is validated and its performance is assessed by simulating a bluff-body case with an important recirculation zone and in which two-way coupling is noticeable.Comment: 23 pages, 10 figure

Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol

We have determined the X-ray crystal structures of the NADH-dependent alcohol dehydrogenase LlAdhA from Lactococcus lactis and its laboratory-evolved variant LlAdhA^(RE1) at 1.9 Å and 2.5 Å resolution, respectively. LlAdhA^(RE1), which contains three amino acid mutations (Y50F, I212T, and L264V), was engineered to increase the microbial production of isobutanol (2-methylpropan-1-ol) from isobutyraldehyde (2-methylpropanal). Structural comparison of LlAdhA and LlAdhA^(RE1) indicates that the enhanced activity on isobutyraldehyde stems from increases in the protein's active site size, hydrophobicity, and substrate access. Further structure-guided mutagenesis generated a quadruple mutant (Y50F/N110S/I212T/L264V), whose K_M for isobutyraldehyde is ∼17-fold lower and catalytic efficiency (k_(cat)/K_M) is ∼160-fold higher than wild-type LlAdhA. Combining detailed structural information and directed evolution, we have achieved significant improvements in non-native alcohol dehydrogenase activity that will facilitate the production of next-generation fuels such as isobutanol from renewable resources